Genetic Diversity in Early Wheat Varieties Using Advanced DNA Markers

Jenn Hoskins
12th June, 2024

Genetic Diversity in Early Wheat Varieties Using Advanced DNA Markers

Image Source: Natural Science News, 2024

Key Findings

  • The study, conducted by Hacettepe University, analyzed genetic differences between Triticum baeoticum and Triticum urartu using advanced genomic tools
  • Researchers found significant genetic differences between the two species, confirming their classification as distinct species
  • The study demonstrated that DArTseq is a fast, cost-effective, and highly accurate method for species and population discrimination, aiding gene bank management
Understanding genetic diversity within and between species is crucial for effective conservation and utilization of plant genetic resources. A recent study conducted by Hacettepe University aimed to elucidate the intra- and interspecies differences between Triticum baeoticum and Triticum urartu using Diversity Arrays Technology sequencing (DArTseq)[1]. This research could significantly impact the management of gene banks and conservation strategies by providing more accurate species identification and understanding of genetic variability. The study analyzed 94 accessions of T. baeoticum and T. urartu, sourced from the US Department of Agriculture and the Turkish Seed Gene Bank. DNA samples were isolated, purified, and sent to Diversity Arrays Technologies for DArTseq analysis. This approach yielded 16,898 single nucleotide polymorphism (SNP) loci and 100,103 SilicoDArT loci after quality filtering. The ADMIXTURE software was employed to determine the population structures within and between the species. The use of ADMIXTURE in this study is noteworthy. ADMIXTURE adopts a model-based approach to estimate ancestry in unrelated individuals and is known for its computational efficiency and accuracy[2]. This software provided insights into the population structures, showing clear distinctions between the two species. Analysis of molecular variance further highlighted the genetic variance between the populations of T. urartu and T. baeoticum. Principal coordinate analysis (PCoA) was utilized to visualize the main sources of variation on a two-dimensional plane. This method is effective for summarizing genetic diversity and identifying clusters within data. The PCoA results supported the findings from ADMIXTURE, showing distinct clusters for each species. To delve deeper into the evolutionary relationships, the researchers constructed phylogenetic dendrograms using the SNP dataset. They applied the maximum likelihood statistical method and the unweighted pair group method with arithmetic mean (UPGMA) clustering algorithm. The phylogenetic analysis confirmed that the accessions of T. urartu and T. baeoticum are separate clusters, reinforcing their classification as distinct species. This study's findings align with previous research that used DArTseq for genetic characterization. For instance, a study on durum wheat landraces from the Central Fertile Crescent also utilized DArTseq and SNP markers to evaluate genetic diversity, showing that this method is reliable for such purposes[3]. Similarly, research on einkorn wheat used DArTseq to trace the spread of domesticated einkorn into Europe, demonstrating the method's applicability in evolutionary studies[4]. The results of the Hacettepe University study have practical implications for gene bank management. Accurate species identification and understanding of genetic diversity are essential for conserving genetic resources and ensuring their availability for future breeding programs. The study demonstrated that DArTseq is a fast, cost-effective, and highly accurate method for species and population discrimination, making it a valuable tool for gene bank curators. In summary, this research provides a comprehensive analysis of the genetic differences between T. urartu and T. baeoticum, using advanced genomic tools and methodologies. It builds on previous studies that have successfully employed DArTseq for genetic characterization and offers new insights that could enhance the conservation and utilization of plant genetic resources.

AgricultureGeneticsPlant Science

References

Main Study

1) Genetic diversity of the Turkish accessions of two progenitor species, Triticum baeoticum Boiss. and Triticum urartu Thum. ex Gandil., using DArTSeq markers

Published 11th June, 2024

https://doi.org/10.1007/s10722-024-02046-8

Related Studies

2) Fast model-based estimation of ancestry in unrelated individuals.

https://doi.org/10.1101/gr.094052.109

3) A Whole Genome DArTseq and SNP Analysis for Genetic Diversity Assessment in Durum Wheat from Central Fertile Crescent.

https://doi.org/10.1371/journal.pone.0167821

4) Geographic differentiation of domesticated einkorn wheat and possible Neolithic migration routes.

https://doi.org/10.1038/hdy.2016.32


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